Supported Species by Platform/Array

AltAnalyze supports RNASeq and array analysis for a growing number of species. These include:

Affymetrix Exon 1.0 and Gene 1.0 Arrays

  • Homo sapiens
  • Mus musculus
  • Rattus norvegicus

Affymetrix Junction Arrays

  • Homo sapiens
  • Mus musculus

RNASeq

(As of Ensembl version 60)

  • Anolis carolinensis
  • Bos taurus
  • Caenorhabditis elegans
  • Callithrix jacchus
  • Canis familiaris
  • Cavia porcellus
  • Choloepus hoffmanni
  • Ciona intestinalis
  • Ciona savignyi
  • Danio rerio
  • Dasypus novemcinctus
  • Dipodomys ordii
  • Drosophila melanogaster
  • Echinops telfairi
  • Equus caballus
  • Erinaceus europaeus
  • Felis catus
  • Gallus gallus
  • Gasterosteus aculeatus
  • Gorilla gorilla
  • Homo sapiens
  • Loxodonta africana
  • Macaca mulatta
  • Macropus eugenii
  • Microcebus murinus
  • Monodelphis domestica
  • Mus musculus
  • Myotis lucifugus
  • Ochotona princeps
  • Ornithorhynchus anatinus
  • Oryctolagus cuniculus
  • Oryzias latipes
  • Otolemur garnettii
  • Pan troglodytes
  • Pongo pygmaeus
  • Procavia capensis
  • Pteropus vampyrus
  • Rattus norvegicus
  • Saccharomyces cerevisiae
  • Sorex araneus
  • Spermophilus tridecemlineatus
  • Sus scrofa
  • Taeniopygia guttata
  • Takifugu rubripes
  • Tarsius syrichta
  • Tetraodon nigroviridis
  • Tupaia belangeri
  • Tursiops truncatus
  • Vicugna pacos
  • Xenopus tropicalis

Affymetrix Conventional (3'array)

  • Anolis carolinensis
  • Anopheles gambiae
  • Arabidopsis thaliana
  • Bos taurus
  • Caenorhabditis elegans
  • Canis familiaris
  • Ciona intestinalis
  • Danio rerio
  • Drosophila melanogaster
  • Equus caballus
  • Gallus gallus
  • Glycine max
  • Homo sapiens
  • Hordeum vulgare
  • Macaca mulatta
  • Mus musculus
  • Oryza sativa
  • Plasmodium falciparum
  • Populus tremula
  • Pseudomonas aeruginosa
  • Rattus norvegicus
  • Saccharomyces cerevisiae
  • Solanum lycopersicum
  • Staphylococcus aureus
  • Sus scrofa
  • Triticum aestivum
  • Vitis vinifera
  • Xenopus laevis
  • Xenopus tropicalis