Running the Full ICGS Workflow from FASTQ Files

Using the new integrated Kallisto pseudoalignment and TPM quantification method, AltAnalyze completely automates gene expression analysis from beginning to end.

Bulk and Single-Cell RNA-Seq Analysis

Video illustrating how easy it is to analyze transcriptome datasets in AltAnalyze. Here we analyze a published single-cell gene expression dataset, supplied as a supplemental table, according to known biological groups and using a de novo group discovery workflow.

Part 1

Part 2

The AltAnalyze Interactive Results Viewer

How to Create a Pathway for WikiPathways in PathVisio